Cortelのアンテナ

2024/11/21 14:01:28 The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003 -- Boeckmann et al. 31 (1): 365 -- Nucleic Acids Research
2024/11/21 10:03:38 Exonization of AluYa5 in the human ACE gene requires mutations in both 3’ and 5’ splice sites and is facilitated by a conserved splicing enhancer -- Lei et al. 33 (12): 3897 -- Nucleic Acids Research
2024/11/21 06:01:32 Genetic Suppression of Intronic +1G Mutations by Compensatory U1 snRNA Changes in Caenorhabditis elegans -- Zahler et al. 167 (4): 1689 -- Genetics
2024/11/19 00:27:13 Intron Retention: A Common Splicing Event within the Human Kallikrein Gene Family -- Michael et al. 51 (3): 506 -- Clinical Chemistry
2024/11/16 09:20:19 Localization of mitochondrial DNA base excision repair to an inner membrane-associated particulate fraction -- Stuart et al. 33 (12): 3722 -- Nucleic Acids Research
2024/11/08 02:27:53 Identification and analysis of alternative splicing events conserved in human and mouse -- Yeo et al. 102 (8): 2850 -- Proceedings of the National Academy of Sciences
2024/11/06 14:51:21 Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans -- Lewis et al. 100 (1): 189 -- Proceedings of the National Academy of Sciences
2024/11/06 08:38:54 Large-scale delineation of secreted protein biomarkers overexpressed in cancer tissue and serum -- Welsh et al. 100 (6): 3410 -- Proceedings of the National Academy of Sciences
2024/07/31 23:34:47 Organelle Proteomics: Implications for Subcellular Fractionation in Proteomics -- Huber et al. 92 (9): 962 -- Circulation Research
2024/01/26 12:59:06 Aberrant and Alternative Splicing in Cancer -- Venables 64 (21): 7647 -- Cancer Research
2023/05/21 17:15:10 Computational Analysis and Experimental Validation of Tumor-associated Alternative RNA Splicing in Human Cancer -- Wang et al. 63 (3): 655 -- Cancer Research
2023/03/03 12:29:43 AraPerox. A Database of Putative Arabidopsis Proteins from Plant Peroxisomes -- Reumann et al. 136 (1): 2587 -- PLANT PHYSIOLOGY
2022/10/26 20:05:24 Novel Splice Variants of Type I Pituitary Adenylate Cyclase-Activating Polypeptide Receptor in Frog Exhibit Altered Adenylate Cyclase Stimulation and Differential Relative Abundance -- Alexandre et al. 143 (7): 2680 -- Endocrinology
2022/10/22 02:47:17 Experimental Analysis of the Arabidopsis Mitochondrial Proteome Highlights Signaling and Regulatory Components, Provides Assessment of Targeting Prediction Programs, and Indicates Plant-Specific Mitochondrial Proteins -- Heazlewood et al. 16 (1): 241 -- T
2022/06/24 03:35:44 The Vegetative Vacuole Proteome of Arabidopsis thaliana Reveals Predicted and Unexpected Proteins -- Carter et al. 16 (12): 3285 -- THE PLANT CELL
2022/01/24 11:21:10 ARAMEMNON, a Novel Database for Arabidopsis Integral Membrane Proteins -- Schwacke et al. 131 (1): 16 -- PLANT PHYSIOLOGY
2022/01/02 00:47:38 Alternative splicing and diversity of renal transporters -- Gamba 281 (5): 781 -- AJP - Renal Physiology
2021/05/05 16:23:41 Genome Biology | Full text | Biased alternative polyadenylation in human tissues
2021/05/05 13:17:17 Genome Biology | Abstract | Do universal codon-usage patterns minimize the effects of mutation and translation error?
2019/10/17 19:42:51 no title
2019/05/29 13:50:55 Sequence conserved for subcellular localization -- Nair and Rost 11 (12): 2836 -- Protein Science
2019/05/29 10:30:47 Novel Development-Related Alternative Splices in Human Testis Identified by cDNA Microarrays -- Huang et al. 26 (2): 189 -- Journal of Andrology
2018/12/26 12:37:19 Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions -- Yu et al. 13 (5): 1402 -- Protein Science
2017/05/04 01:37:16 Support vector machine approach for protein subcellular localization prediction -- Hua and Sun 17 (8): 721 -- Bioinformatics
2017/05/04 01:17:33 A novel method for automatic functional annotation of proteins -- Fleischmann et al. 15 (3): 228 -- Bioinformatics
2017/05/04 00:41:47 Predicting subcellular localization of proteins in a hybridization space -- Cai and Chou 20 (7): 1151 -- Bioinformatics
2017/05/03 23:55:15 NMPdb: Database of Nuclear Matrix Proteins -- Mika and Rost 33 (Supplement 1): D160 -- Nucleic Acids Research
2017/05/03 23:47:13 A simple statistical method for discriminating outer membrane proteins with better accuracy -- Gromiha and Suwa 21 (7): 961 -- Bioinformatics
2017/05/03 23:16:42 Evaluation of human-readable annotation in biomolecular sequence databases with biological rule libraries -- Eisenhaber and Bork 15 (7): 528 -- Bioinformatics
2017/05/03 22:27:25 MITOPRED: a genome-scale method for prediction of nucleus-encoded mitochondrial proteins -- Guda et al. 20 (11): 1785 -- Bioinformatics
2017/05/03 22:22:44 ASD: the Alternative Splicing Database -- Thanaraj et al. 32 (Supplement 1): 64 -- Nucleic Acids Research
2017/05/03 22:22:33 LOCnet and LOCtarget: sub-cellular localization for structural genomics targets -- Nair and Rost 32 (Supplement 2): W517 -- Nucleic Acids Research
2017/05/03 21:44:51 TargetDB: a database of peptides targeting proteins to subcellular locations -- Wei and O’Connell 15 (9): 765 -- Bioinformatics
2017/05/03 21:15:09 Predicting subcellular localization of proteins using machine-learned classifiers -- Lu et al. 20 (4): 547 -- Bioinformatics
2017/05/03 21:14:44 Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs -- Park and Kanehisa 19 (13): 1656 -- Bioinformatics
2017/05/03 20:23:02 Prediction of protein subcellular locations using fuzzy k-NN method -- Huang and Li 20 (1): 21 -- Bioinformatics
2017/05/03 19:53:55 Extensive feature detection of N-terminal protein sorting signals -- Bannai et al. 18 (2): 298 -- Bioinformatics
2017/05/03 19:53:46 LIFEdb: a database for functional genomics experiments integrating information from external sources, and serving as a sample tracking system -- Bannasch et al. 32 (Supplement 1): 505 -- Nucleic Acids Research
2017/05/03 19:53:38 5’SAGE: 5’-end Serial Analysis of Gene Expression database -- Kasai et al. 33 (Supplement 1): D550 -- Nucleic Acids Research
2017/05/03 19:00:10 PEP: Predictions for Entire Proteomes -- Carter et al. 31 (1): 410 -- Nucleic Acids Research
2017/05/03 18:32:58 ASAP: the Alternative Splicing Annotation Project -- Lee et al. 31 (1): 101 -- Nucleic Acids Research
2017/05/03 18:32:39 SPEPlip: the detection of signal peptide and lipoprotein cleavage sites -- Fariselli et al. 19 (18): 2498 -- Bioinformatics
2017/05/03 18:29:48 NLSdb: database of nuclear localization signals -- Nair et al. 31 (1): 397 -- Nucleic Acids Research
2017/05/03 18:29:36 NLProt: extracting protein names and sequences from papers -- Mika and Rost 32 (Supplement 2): W634 -- Nucleic Acids Research
2017/05/03 18:29:16 A survey of splice variants of the human hypoxanthine phosphoribosyl transferase and DNA polymerase beta genes: products of alternative or aberrant splicing? -- Skandalis and Uribe 32 (22): 6557 -- Nucleic Acids Research
2017/05/03 18:21:22 EASED: Extended Alternatively Spliced EST Database -- Pospisil et al. 32 (Supplement 1): 70 -- Nucleic Acids Research
2017/05/03 16:47:31 DBSubLoc: database of protein subcellular localization -- Guo et al. 32 (Supplement 1): 122 -- Nucleic Acids Research
2017/05/03 16:38:53 ASmodeler: gene modeling of alternative splicing from genomic alignment of mRNA, EST and protein sequences -- Kim et al. 32 (Supplement 2): W181 -- Nucleic Acids Research
2017/05/03 16:38:41 Inferring sub-cellular localization through automated lexical analysis -- Nair and Rost 18 (Supplement 1): 78 -- Bioinformatics
2017/05/03 16:29:33 SNPeffect: a database mapping molecular phenotypic effects of human non-synonymous coding SNPs -- Reumers et al. 33 (Supplement 1): D527 -- Nucleic Acids Research
2017/05/03 16:29:04 A new method for predicting signal sequence cleavage sites -- von Heijne 14 (11): 4683 -- Nucleic Acids Research
2017/05/03 16:19:33 Prediction of lipid posttranslational modifications and localization signals from protein sequences: big-{Pi}, NMT and PTS1 -- Eisenhaber et al. 31 (13): 3631 -- Nucleic Acids Research
2017/05/03 16:15:13 UniqueProt: creating representative protein sequence sets -- Mika and Rost 31 (13): 3789 -- Nucleic Acids Research
2017/05/03 16:13:31 META-PP: single interface to crucial prediction servers -- Eyrich and Rost 31 (13): 3308 -- Nucleic Acids Research
2017/05/03 15:58:07 Static benchmarking of membrane helix predictions -- Kernytsky and Rost 31 (13): 3642 -- Nucleic Acids Research
2017/05/03 15:51:13 SpliceInfo: an information repository for mRNA alternative splicing in human genome -- Huang et al. 33 (Supplement 1): D80 -- Nucleic Acids Research
2017/05/03 15:32:22 ECgene: genome annotation for alternative splicing -- Kim et al. 33 (Supplement 1): D75 -- Nucleic Acids Research
2017/05/03 14:56:53 SPD--a web-based secreted protein database -- Chen et al. 33 (Supplement 1): D169 -- Nucleic Acids Research
2017/05/03 02:12:05 Analysis of mRNA expression and protein abundance data: an approach for the comparison of the enrichment of features in the cellular population of proteins and transcripts -- Greenbaum et al. 18 (4): 585 -- Bioinformatics
2017/05/02 16:55:43 LOC3D: annotate sub-cellular localization for protein structures -- Nair and Rost 31 (13): 3337 -- Nucleic Acids Research
2017/04/30 01:27:46 PA-GOSUB: a searchable database of model organism protein sequences with their predicted Gene Ontology molecular function and subcellular localization -- Lu et al. 33 (Supplement 1): D147 -- Nucleic Acids Research
2017/04/29 19:06:11 Human GC-AG alternative intron isoforms with weak donor sites show enhanced consensus at acceptor exon positions -- Thanaraj and Clark 29 (12): 2581 -- Nucleic Acids Research
2017/04/28 20:27:26 Analysis and recognition of 5’ UTR intron splice sites in human pre-mRNA -- Eden and Brunak 32 (3): 1131 -- Nucleic Acids Research
2017/04/28 20:22:25 Detecting tissue-specific regulation of alternative splicing as a qualitative change in microarray data -- Le et al. 32 (22): e180 -- Nucleic Acids Research
2017/04/28 19:41:32 Organelle DB: a cross-species database of protein localization and function -- Wiwatwattana and Kumar 33 (Supplement 1): D598 -- Nucleic Acids Research
2017/04/28 19:32:53 Feature-based prediction of non-classical and leaderless protein secretion -- Bendtsen et al. 17 (4): 349 -- Protein Engineering Design and Selection
2017/04/28 18:47:09 Nematode selenoproteome: the use of the selenocysteine insertion system to decode one codon in an animal genome? -- Taskov et al. 33 (7): 2227 -- Nucleic Acids Research
2017/04/28 15:39:10 Intrinsic differences between authentic and cryptic 5’ splice sites -- Roca et al. 31 (21): 6321 -- Nucleic Acids Research
2017/04/28 15:26:06 Implicit motif distribution based hybrid computational kernel for sequence classification -- Atalay and Cetin-Atalay 21 (8): 1429 -- Bioinformatics
2017/04/28 15:15:48 The splicing regulatory element, UGCAUG, is phylogenetically and spatially conserved in introns that flank tissue-specific alternative exons -- Minovitsky et al. 33 (2): 714 -- Nucleic Acids Research
2017/04/28 15:15:37 Genome-wide detection of alternative splicing in expressed sequences of human genes -- Modrek et al. 29 (13): 2850 -- Nucleic Acids Research
2017/04/28 14:11:40 Origin of alternative splicing by tandem exon duplication -- Kondrashov and Koonin 10 (23): 2661 -- Human Molecular Genetics
2017/04/28 13:23:04 Analysis of the role of Caenorhabditis elegans GC-AG introns in regulated splicing -- Farrer et al. 30 (15): 3360 -- Nucleic Acids Research
2017/04/28 13:22:18 Low conservation of alternative splicing patterns in the human and mouse genomes -- Nurtdinov et al. 12 (11): 1313 -- Human Molecular Genetics
2017/04/28 12:48:51 PSORTb v.2.0: Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis -- Gardy et al. 21 (5): 617 -- Bioinformatics
2017/04/28 11:12:16 Comparative genomics and evolution of proteins involved in RNA metabolism -- Anantharaman et al. 30 (7): 1427 -- Nucleic Acids Research
2017/04/28 10:53:58 Global protein function annotation through mining genome-scale data in yeast Saccharomyces cerevisiae -- Chen and Xu 32 (21): 6414 -- Nucleic Acids Research
2017/04/28 10:42:22 Machine learning approaches for the prediction of signal peptides and other protein sorting signals -- Nielsen et al. 12 (1): 3 -- Protein Engineering Design and Selection
2017/04/28 10:09:31 A frameshifting mutation in CHRNE unmasks skipping of the preceding exon -- Ohno et al. 12 (23): 3055 -- Human Molecular Genetics
2017/04/28 09:54:15 EVA: evaluation of protein structure prediction servers -- Koh et al. 31 (13): 3311 -- Nucleic Acids Research
2017/04/28 09:42:28 PSORTdb: a protein subcellular localization database for bacteria -- Rey et al. 33 (Supplement 1): D164 -- Nucleic Acids Research
2017/04/28 09:41:28 The PredictProtein server -- Rost et al. 32 (Supplement 2): W321 -- Nucleic Acids Research
2017/04/28 09:41:17 TopNet: a tool for comparing biological sub-networks, correlating protein properties with topological statistics -- Yu et al. 32 (1): 328 -- Nucleic Acids Research
2017/04/28 09:32:40 Predicting transmembrane beta-barrels in proteomes -- Bigelow et al. 32 (8): 2566 -- Nucleic Acids Research
2017/04/28 09:21:58 A microarray configuration to quantify expression levels and relative abundance of splice variants -- Fehlbaum et al. 33 (5): e47 -- Nucleic Acids Research
2017/04/28 09:21:34 Large scale study of protein domain distribution in the context of alternative splicing -- Liu and Altman 31 (16): 4828 -- Nucleic Acids Research
2017/04/28 09:14:31 Genome-wide detection of tissue-specific alternative splicing in the human transcriptome -- Xu et al. 30 (17): 3754 -- Nucleic Acids Research
2017/04/28 09:08:07 Functional analysis of subcellular localization and protein-protein interaction sequences in the essential DNA ligase I protein of fission yeast -- Martin and MacNeill 32 (2): 632 -- Nucleic Acids Research
2017/04/28 09:07:29 ’Conserved hypothetical’ proteins: prioritization of targets for experimental study -- Galperin and Koonin 32 (18): 5452 -- Nucleic Acids Research
2017/04/28 08:50:44 Common exon duplication in animals and its role in alternative splicing -- Letunic et al. 11 (13): 1561 -- Human Molecular Genetics
2017/04/28 08:50:35 ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST -- Bhasin and Raghava 32 (Supplement 2): W414 -- Nucleic Acids Research
2017/04/28 08:29:52 A question of size: the eukaryotic proteome and the problems in defining it -- Harrison et al. 30 (5): 1083 -- Nucleic Acids Research
2017/04/28 08:27:31 The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome -- Leipzig et al. 32 (13): 3977 -- Nucleic Acids Research
2017/04/28 08:26:16 AMPDB: the Arabidopsis Mitochondrial Protein Database -- Heazlewood and Millar 33 (Supplement 1): D605 -- Nucleic Acids Research
2017/04/28 08:26:04 Computational analysis of candidate intron regulatory elements for tissue-specific alternative pre-mRNA splicing -- Brudno et al. 29 (11): 2338 -- Nucleic Acids Research
2017/04/28 08:25:32 Evidence for the regulation of alternative splicing via complementary DNA sequence repeats -- Lian and Garner 21 (8): 1358 -- Bioinformatics
2017/04/28 08:23:03 Predicting protein localization in budding Yeast -- Chou and Cai 21 (7): 944 -- Bioinformatics
2017/04/28 08:15:30 A GFP-based reporter system to monitor nonsense-mediated mRNA decay -- Paillusson et al. 33 (6): e54 -- Nucleic Acids Research
2017/04/28 08:15:22 Identifying secretomes in people, pufferfish and pigs -- Klee et al. 32 (4): 1414 -- Nucleic Acids Research
2017/04/28 08:13:28 Tissue-dependent isoforms of mammalian Fox-1 homologs are associated with tissue-specific splicing activities -- Nakahata and Kawamoto 33 (7): 2078 -- Nucleic Acids Research
2017/04/28 07:50:27 High-throughput protein analysis integrating bioinformatics and experimental assays -- del Val et al. 32 (2): 742 -- Nucleic Acids Research
2017/04/28 07:49:36 Discovery of novel splice forms and functional analysis of cancer-specific alternative splicing in human expressed sequences -- Xu and Lee 31 (19): 5635 -- Nucleic Acids Research
2017/04/28 07:02:18 Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signals -- Nakao et al. 33 (8): 2355 -- Nucleic Acids Research
2017/04/28 06:12:21 PSORT-B: improving protein subcellular localization prediction for Gram-negative bacteria -- Gardy et al. 31 (13): 3613 -- Nucleic Acids Research
2017/04/28 05:49:34 Evidence for a subpopulation of conserved alternative splicing events under selection pressure for protein reading frame preservation -- Resch et al. 32 (4): 1261 -- Nucleic Acids Research
2017/04/28 05:48:53 Conservation of human alternative splice events in mouse -- Thanaraj et al. 31 (10): 2544 -- Nucleic Acids Research
2017/01/27 22:48:13 Comparative Analysis of Amino Acid Usage and Protein Length Distribution Between Alternatively and Non-alternatively Spliced Genes Across Six Eukaryotic Genomes -- Zhuang et al. 20 (12): 1978 -- Molecular Biology and Evolution
2017/01/12 11:42:25 Prediction of subcellular localisation using sequence-biased recurrent networks -- Bodén and Hawkins, 10.1093/bioinformatics/bti372 -- Bioinformatics
2017/01/12 09:40:14 PSLpred: prediction of subcellular localization of bacterial proteins -- Bhasin et al., 10.1093/bioinformatics/bti309 -- Bioinformatics
2015/09/10 09:50:28 A Comparative Proteomic Strategy for Subcellular Proteome Research: Icat Approach Coupled with Bioinformatics Prediction to Ascertain Rat Liver Mitochondrial Proteins and Indication of Mitochondrial Localization for Catalase -- Jiang et al. 4 (1): 12 -- M
2005/04/10 00:46:28 Signal peptide prediction based on analysis of experimentally verified cleavage sites -- Zhang and Henzel 13 (10): 2819 -- Protein Science