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2024/11/22 06:34:01 Exonization of AluYa5 in the human ACE gene requires mutations in both 3’ and 5’ splice sites and is facilitated by a conserved splicing enhancer -- Lei et al. 33 (12): 3897 -- Nucleic Acids Research
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2024/11/22 05:28:35 Localization of mitochondrial DNA base excision repair to an inner membrane-associated particulate fraction -- Stuart et al. 33 (12): 3722 -- Nucleic Acids Research
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Single-stranded DNA with internal base modifications mediates highly efficient knock-in in primary cells using CRISPR-Cas9
Dimerization of the deaminase domain and locking interactions with Cas9 boost base editing efficiency in ABE8e
Deep learning insights into distinct patterns of polygenic adaptation across human populations
Harmonizome 3.0: integrated knowledge about genes and proteins from diverse multi-omics resources
Crosstalk between paralogs and isoforms influences p63-dependent regulatory element activity
2024/11/21 14:01:28 The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003 -- Boeckmann et al. 31 (1): 365 -- Nucleic Acids Research
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2024/11/21 06:01:32 Genetic Suppression of Intronic +1G Mutations by Compensatory U1 snRNA Changes in Caenorhabditis elegans -- Zahler et al. 167 (4): 1689 -- Genetics
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2024/11/19 00:27:13 Intron Retention: A Common Splicing Event within the Human Kallikrein Gene Family -- Michael et al. 51 (3): 506 -- Clinical Chemistry
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2024/11/08 02:27:53 Identification and analysis of alternative splicing events conserved in human and mouse -- Yeo et al. 102 (8): 2850 -- Proceedings of the National Academy of Sciences
Cite this article
G.W. Yeo, E. Van Nostrand, D. Holste, T. Poggio, C.B. Burge, Identification and analysis of alternative splicing events conserved in human and mouse, Proc. Natl. Acad. Sci. U.S.A.
102 (8) 2850-2855,
https://doi.org/10.1073/pnas.0409742102 (2005).
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2024/11/06 14:51:21 Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans -- Lewis et al. 100 (1): 189 -- Proceedings of the National Academy of Sciences
Cite this article
B.P. Lewis, R.E. Green, S.E. Brenner, Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans, Proc. Natl. Acad. Sci. U.S.A.
100 (1) 189-192,
https://doi.org/10.1073/pnas.0136770100 (2003).
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2024/11/06 08:38:54 Large-scale delineation of secreted protein biomarkers overexpressed in cancer tissue and serum -- Welsh et al. 100 (6): 3410 -- Proceedings of the National Academy of Sciences
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J.B. Welsh, L.M. Sapinoso, S.G. Kern, D.A. Brown, T. Liu, A.R. Bauskin, R.L. Ward, N.J. Hawkins, D.I. Quinn, P.J. Russell, R.L. Sutherland, S.N. Breit, C.A. Moskaluk, H.F. Frierson, G.M. Hampton, Large-scale delineation of secreted protein biomarkers overexpressed in cancer tissue and serum, Proc. Natl. Acad. Sci. U.S.A.
100 (6) 3410-3415,
https://doi.org/10.1073/pnas.0530278100 (2003).
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Research ArticleDecember 30, 2013
Bodily maps of emotions
Emotions coordinate our behavior
2024/07/31 23:34:47 Organelle Proteomics: Implications for Subcellular Fractionation in Proteomics -- Huber et al. 92 (9): 962 -- Circulation Research
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2024/01/26 12:59:06 Aberrant and Alternative Splicing in Cancer -- Venables 64 (21): 7647 -- Cancer Research
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2023/05/21 17:15:10 Computational Analysis and Experimental Validation of Tumor-associated Alternative RNA Splicing in Human Cancer -- Wang et al. 63 (3): 655 -- Cancer Research
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2023/03/03 12:29:43 AraPerox. A Database of Putative Arabidopsis Proteins from Plant Peroxisomes -- Reumann et al. 136 (1): 2587 -- PLANT PHYSIOLOGY
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2022/10/26 20:05:24 Novel Splice Variants of Type I Pituitary Adenylate Cyclase-Activating Polypeptide Receptor in Frog Exhibit Altered Adenylate Cyclase Stimulation and Differential Relative Abundance -- Alexandre et al. 143 (7): 2680 -- Endocrinology
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2022/10/22 02:47:17 Experimental Analysis of the Arabidopsis Mitochondrial Proteome Highlights Signaling and Regulatory Components, Provides Assessment of Targeting Prediction Programs, and Indicates Plant-Specific Mitochondrial Proteins -- Heazlewood et al. 16 (1): 241 -- T
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2022/06/24 03:35:44 The Vegetative Vacuole Proteome of Arabidopsis thaliana Reveals Predicted and Unexpected Proteins -- Carter et al. 16 (12): 3285 -- THE PLANT CELL
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2022/01/24 11:21:10 ARAMEMNON, a Novel Database for Arabidopsis Integral Membrane Proteins -- Schwacke et al. 131 (1): 16 -- PLANT PHYSIOLOGY
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2022/01/02 00:47:38 Alternative splicing and diversity of renal transporters -- Gamba 281 (5): 781 -- AJP - Renal Physiology
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2021/05/05 16:23:41 Genome Biology | Full text | Biased alternative polyadenylation in human tissues
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2019/05/29 13:50:55 Sequence conserved for subcellular localization -- Nair and Rost 11 (12): 2836 -- Protein Science
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2019/05/29 10:30:47 Novel Development-Related Alternative Splices in Human Testis Identified by cDNA Microarrays -- Huang et al. 26 (2): 189 -- Journal of Andrology
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2018/12/26 12:37:19 Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions -- Yu et al. 13 (5): 1402 -- Protein Science
2017/05/04 01:37:16 Support vector machine approach for protein subcellular localization prediction -- Hua and Sun 17 (8): 721 -- Bioinformatics
A deep learning framework for improving long-range residue-residue contact prediction using a hierarchical strategy
EBT: A Statistic Test Identifying Moderate Size of Significant Features with Balanced Power and Precision for Genome-wide Rate Comparisons
OMSim: a simulator for optical map data
2017/05/04 01:17:33 A novel method for automatic functional annotation of proteins -- Fleischmann et al. 15 (3): 228 -- Bioinformatics
A deep learning framework for improving long-range residue-residue contact prediction using a hierarchical strategy
EBT: A Statistic Test Identifying Moderate Size of Significant Features with Balanced Power and Precision for Genome-wide Rate Comparisons
OMSim: a simulator for optical map data
2017/05/04 00:41:47 Predicting subcellular localization of proteins in a hybridization space -- Cai and Chou 20 (7): 1151 -- Bioinformatics
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A deep learning framework for improving long-range residue-residue contact prediction using a hierarchical strategy
EBT: A Statistic Test Identifying Moderate Size of Significant Features with Balanced Power and Precision for Genome-wide Rate Comparisons
OMSim: a simulator for optical map data
2017/05/03 23:55:15 NMPdb: Database of Nuclear Matrix Proteins -- Mika and Rost 33 (Supplement 1): D160 -- Nucleic Acids Research
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2017/05/03 23:47:13 A simple statistical method for discriminating outer membrane proteins with better accuracy -- Gromiha and Suwa 21 (7): 961 -- Bioinformatics
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2017/05/03 23:16:42 Evaluation of human-readable annotation in biomolecular sequence databases with biological rule libraries -- Eisenhaber and Bork 15 (7): 528 -- Bioinformatics
A deep learning framework for improving long-range residue-residue contact prediction using a hierarchical strategy
EBT: A Statistic Test Identifying Moderate Size of Significant Features with Balanced Power and Precision for Genome-wide Rate Comparisons
2017/05/03 22:27:25 MITOPRED: a genome-scale method for prediction of nucleus-encoded mitochondrial proteins -- Guda et al. 20 (11): 1785 -- Bioinformatics
A deep learning framework for improving long-range residue-residue contact prediction using a hierarchical strategy
EBT: A Statistic Test Identifying Moderate Size of Significant Features with Balanced Power and Precision for Genome-wide Rate Comparisons
2017/05/03 22:22:44 ASD: the Alternative Splicing Database -- Thanaraj et al. 32 (Supplement 1): 64 -- Nucleic Acids Research
DynOmics: dynamics of structural proteome and beyond
PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database
DSSR-enhanced visualization of nucleic acid structures in Jmol
Olelo: a web application for intuitive exploration of biomedical literature
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2017/05/03 22:22:33 LOCnet and LOCtarget: sub-cellular localization for structural genomics targets -- Nair and Rost 32 (Supplement 2): W517 -- Nucleic Acids Research
DynOmics: dynamics of structural proteome and beyond
PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database
DSSR-enhanced visualization of nucleic acid structures in Jmol
Olelo: a web application for intuitive exploration of biomedical literature
Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data
2017/05/03 21:44:51 TargetDB: a database of peptides targeting proteins to subcellular locations -- Wei and O’Connell 15 (9): 765 -- Bioinformatics
A deep learning framework for improving long-range residue-residue contact prediction using a hierarchical strategy
EBT: A Statistic Test Identifying Moderate Size of Significant Features with Balanced Power and Precision for Genome-wide Rate Comparisons
2017/05/03 21:15:09 Predicting subcellular localization of proteins using machine-learned classifiers -- Lu et al. 20 (4): 547 -- Bioinformatics
A deep learning framework for improving long-range residue-residue contact prediction using a hierarchical strategy
EBT: A Statistic Test Identifying Moderate Size of Significant Features with Balanced Power and Precision for Genome-wide Rate Comparisons
2017/05/03 21:14:44 Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs -- Park and Kanehisa 19 (13): 1656 -- Bioinformatics
A deep learning framework for improving long-range residue-residue contact prediction using a hierarchical strategy
EBT: A Statistic Test Identifying Moderate Size of Significant Features with Balanced Power and Precision for Genome-wide Rate Comparisons
2017/05/03 20:23:02 Prediction of protein subcellular locations using fuzzy k-NN method -- Huang and Li 20 (1): 21 -- Bioinformatics
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A deep learning framework for improving long-range residue-residue contact prediction using a hierarchical strategy
EBT: A Statistic Test Identifying Moderate Size of Significant Features with Balanced Power and Precision for Genome-wide Rate Comparisons
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2017/05/03 19:53:55 Extensive feature detection of N-terminal protein sorting signals -- Bannai et al. 18 (2): 298 -- Bioinformatics
A deep learning framework for improving long-range residue-residue contact prediction using a hierarchical strategy
EBT: A Statistic Test Identifying Moderate Size of Significant Features with Balanced Power and Precision for Genome-wide Rate Comparisons
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2017/05/03 19:53:46 LIFEdb: a database for functional genomics experiments integrating information from external sources, and serving as a sample tracking system -- Bannasch et al. 32 (Supplement 1): 505 -- Nucleic Acids Research
DynOmics: dynamics of structural proteome and beyond
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2017/05/03 19:53:38 5’SAGE: 5’-end Serial Analysis of Gene Expression database -- Kasai et al. 33 (Supplement 1): D550 -- Nucleic Acids Research
DynOmics: dynamics of structural proteome and beyond
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2017/05/03 19:00:10 PEP: Predictions for Entire Proteomes -- Carter et al. 31 (1): 410 -- Nucleic Acids Research
DynOmics: dynamics of structural proteome and beyond
PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database
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2017/05/03 18:32:58 ASAP: the Alternative Splicing Annotation Project -- Lee et al. 31 (1): 101 -- Nucleic Acids Research
DynOmics: dynamics of structural proteome and beyond
PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database
DSSR-enhanced visualization of nucleic acid structures in Jmol
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Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data
2017/05/03 18:32:39 SPEPlip: the detection of signal peptide and lipoprotein cleavage sites -- Fariselli et al. 19 (18): 2498 -- Bioinformatics
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A deep learning framework for improving long-range residue-residue contact prediction using a hierarchical strategy
EBT: A Statistic Test Identifying Moderate Size of Significant Features with Balanced Power and Precision for Genome-wide Rate Comparisons
OMSim: a simulator for optical map data
2017/05/03 18:29:48 NLSdb: database of nuclear localization signals -- Nair et al. 31 (1): 397 -- Nucleic Acids Research
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DynOmics: dynamics of structural proteome and beyond
PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database
DSSR-enhanced visualization of nucleic acid structures in Jmol
Olelo: a web application for intuitive exploration of biomedical literature
Predicting transcription fac
2017/05/03 18:29:36 NLProt: extracting protein names and sequences from papers -- Mika and Rost 32 (Supplement 2): W634 -- Nucleic Acids Research
DynOmics: dynamics of structural proteome and beyond
PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database
DSSR-enhanced visualization of nucleic acid structures in Jmol
Olelo: a web application for intuitive exploration of biomedical literature
Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data
2017/05/03 18:29:16 A survey of splice variants of the human hypoxanthine phosphoribosyl transferase and DNA polymerase beta genes: products of alternative or aberrant splicing? -- Skandalis and Uribe 32 (22): 6557 -- Nucleic Acids Research
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2017/05/03 18:21:22 EASED: Extended Alternatively Spliced EST Database -- Pospisil et al. 32 (Supplement 1): 70 -- Nucleic Acids Research
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DynOmics: dynamics of structural proteome and beyond
PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database
DSSR-enhanced visualization of nucleic acid structures in Jmol
Olelo: a web application for intuitive exploration of biomedical literature
Predicting transcription fac
2017/05/03 16:47:31 DBSubLoc: database of protein subcellular localization -- Guo et al. 32 (Supplement 1): 122 -- Nucleic Acids Research
DynOmics: dynamics of structural proteome and beyond
PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database
DSSR-enhanced visualization of nucleic acid structures in Jmol
Olelo: a web application for intuitive exploration of biomedical literature
Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data
2017/05/03 16:38:53 ASmodeler: gene modeling of alternative splicing from genomic alignment of mRNA, EST and protein sequences -- Kim et al. 32 (Supplement 2): W181 -- Nucleic Acids Research
DynOmics: dynamics of structural proteome and beyond
PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database
DSSR-enhanced visualization of nucleic acid structures in Jmol
Olelo: a web application for intuitive exploration of biomedical literature
Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data
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2017/05/03 16:38:41 Inferring sub-cellular localization through automated lexical analysis -- Nair and Rost 18 (Supplement 1): 78 -- Bioinformatics
OMSim: a simulator for optical map data
2017/05/03 16:29:33 SNPeffect: a database mapping molecular phenotypic effects of human non-synonymous coding SNPs -- Reumers et al. 33 (Supplement 1): D527 -- Nucleic Acids Research
DynOmics: dynamics of structural proteome and beyond
PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database
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Olelo: a web application for intuitive exploration of biomedical literature
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2017/05/03 16:29:04 A new method for predicting signal sequence cleavage sites -- von Heijne 14 (11): 4683 -- Nucleic Acids Research
DynOmics: dynamics of structural proteome and beyond
PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database
DSSR-enhanced visualization of nucleic acid structures in Jmol
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Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data
2017/05/03 16:19:33 Prediction of lipid posttranslational modifications and localization signals from protein sequences: big-{Pi}, NMT and PTS1 -- Eisenhaber et al. 31 (13): 3631 -- Nucleic Acids Research
DynOmics: dynamics of structural proteome and beyond
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Olelo: a web application for intuitive exploration of biomedical literature
Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data
2017/05/03 16:15:13 UniqueProt: creating representative protein sequence sets -- Mika and Rost 31 (13): 3789 -- Nucleic Acids Research
DynOmics: dynamics of structural proteome and beyond
PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database
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Olelo: a web application for intuitive exploration of biomedical literature
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2017/05/03 16:13:31 META-PP: single interface to crucial prediction servers -- Eyrich and Rost 31 (13): 3308 -- Nucleic Acids Research
DynOmics: dynamics of structural proteome and beyond
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2017/05/03 15:58:07 Static benchmarking of membrane helix predictions -- Kernytsky and Rost 31 (13): 3642 -- Nucleic Acids Research
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2017/05/03 15:51:13 SpliceInfo: an information repository for mRNA alternative splicing in human genome -- Huang et al. 33 (Supplement 1): D80 -- Nucleic Acids Research
DynOmics: dynamics of structural proteome and beyond
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2017/05/03 15:32:22 ECgene: genome annotation for alternative splicing -- Kim et al. 33 (Supplement 1): D75 -- Nucleic Acids Research
DynOmics: dynamics of structural proteome and beyond
PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database
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2017/05/03 14:56:53 SPD--a web-based secreted protein database -- Chen et al. 33 (Supplement 1): D169 -- Nucleic Acids Research
DynOmics: dynamics of structural proteome and beyond
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2017/05/03 02:12:05 Analysis of mRNA expression and protein abundance data: an approach for the comparison of the enrichment of features in the cellular population of proteins and transcripts -- Greenbaum et al. 18 (4): 585 -- Bioinformatics
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STOPGAP: a database for systematic target opportunity assessment by genetic association predictions
2017/05/02 16:55:43 LOC3D: annotate sub-cellular localization for protein structures -- Nair and Rost 31 (13): 3337 -- Nucleic Acids Research
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2017/04/29 19:06:11 Human GC-AG alternative intron isoforms with weak donor sites show enhanced consensus at acceptor exon positions -- Thanaraj and Clark 29 (12): 2581 -- Nucleic Acids Research
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2017/04/28 09:41:17 TopNet: a tool for comparing biological sub-networks, correlating protein properties with topological statistics -- Yu et al. 32 (1): 328 -- Nucleic Acids Research
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2017/04/28 09:32:40 Predicting transmembrane beta-barrels in proteomes -- Bigelow et al. 32 (8): 2566 -- Nucleic Acids Research
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2017/04/28 09:21:58 A microarray configuration to quantify expression levels and relative abundance of splice variants -- Fehlbaum et al. 33 (5): e47 -- Nucleic Acids Research
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2017/04/28 09:21:34 Large scale study of protein domain distribution in the context of alternative splicing -- Liu and Altman 31 (16): 4828 -- Nucleic Acids Research
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2017/04/28 09:14:31 Genome-wide detection of tissue-specific alternative splicing in the human transcriptome -- Xu et al. 30 (17): 3754 -- Nucleic Acids Research
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2017/04/28 09:08:07 Functional analysis of subcellular localization and protein-protein interaction sequences in the essential DNA ligase I protein of fission yeast -- Martin and MacNeill 32 (2): 632 -- Nucleic Acids Research
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2017/04/28 09:07:29 ’Conserved hypothetical’ proteins: prioritization of targets for experimental study -- Galperin and Koonin 32 (18): 5452 -- Nucleic Acids Research
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2017/04/28 08:50:44 Common exon duplication in animals and its role in alternative splicing -- Letunic et al. 11 (13): 1561 -- Human Molecular Genetics
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2017/04/28 08:50:35 ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST -- Bhasin and Raghava 32 (Supplement 2): W414 -- Nucleic Acids Research
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2017/04/28 08:29:52 A question of size: the eukaryotic proteome and the problems in defining it -- Harrison et al. 30 (5): 1083 -- Nucleic Acids Research
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2017/04/28 08:27:31 The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome -- Leipzig et al. 32 (13): 3977 -- Nucleic Acids Research
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2017/04/28 08:26:16 AMPDB: the Arabidopsis Mitochondrial Protein Database -- Heazlewood and Millar 33 (Supplement 1): D605 -- Nucleic Acids Research
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2017/04/28 08:26:04 Computational analysis of candidate intron regulatory elements for tissue-specific alternative pre-mRNA splicing -- Brudno et al. 29 (11): 2338 -- Nucleic Acids Research
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2017/04/28 08:25:32 Evidence for the regulation of alternative splicing via complementary DNA sequence repeats -- Lian and Garner 21 (8): 1358 -- Bioinformatics
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2017/04/28 08:23:03 Predicting protein localization in budding Yeast -- Chou and Cai 21 (7): 944 -- Bioinformatics
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2017/04/28 08:15:30 A GFP-based reporter system to monitor nonsense-mediated mRNA decay -- Paillusson et al. 33 (6): e54 -- Nucleic Acids Research
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2017/04/28 08:15:22 Identifying secretomes in people, pufferfish and pigs -- Klee et al. 32 (4): 1414 -- Nucleic Acids Research
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2017/04/28 08:13:28 Tissue-dependent isoforms of mammalian Fox-1 homologs are associated with tissue-specific splicing activities -- Nakahata and Kawamoto 33 (7): 2078 -- Nucleic Acids Research
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